Summary
Resource Type
Analysis
Name
ZEAMAP Genetic Variations: SNPs and INDELs
Description

The SNPs and InDels were gathered from Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Then relocated to B73v4 and re-genotyped using DNA deep re-sequencing data (~20x) of the AMP (see Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement) with GATK v3.8. The final SNPs and InDels were annotated using the Ensembl variant effect predictor (VEP), according to B73v4 gene annotation.

Program, Pipeline, Workflow or Method Name
GATK
Program Version
v3.8
Date Performed
Monday, March 30, 2020 - 12:08
Data Source